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Biomonitoring projects



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Ary Hoffman, Program Leader

"What CESAR biomonitoring research is really doing is taking advantage of the massive amounts of invertebrate biodiversity in environments and DNA techniques to develop smarter ways of monitoring environmental stresses; this provides a much more detailed picture of what is wrong with an environment and how it can be fixed

The Biomonitoring Program 

The central aim of the biomonitoring program is to come up with better indicators for monitoring environmental stress. Primarily, we focus on invertebrates as indicators. Invertebrates make excellent environmental indicators due to their diversity, abundance, diverse array of responses to environmental change and the important role they play in many ecosystems. The biomonitoring program has evolved into two components:

  • Aquatic biomonitoring
  • Terrestrial biomonitoring

Aquatic Biomonitoring

The aquatic biomonitoring program primarily targets macroinvertebrates identified to species-level as indicators of pollution. The program utilizes the broad range of pollution sensitivities found in aquatic macroinvertebrates, notably chironomids, and uses these to assess whether aquatic environments are impaired from pollution. A field based microcosm method for pollution assessment and molecular approaches for chironomid species identification represent some of our research achievements.

Other research in the aquatic program covers:

  • Investigating the impact of exotic fish species
  • Conservation strategies for endangered fish species
  • Morphological trait variation of Egeria densa in response to sediment pollution

Program Highlights for 2007

  • Completion of a large microcosm experiment examining sediment toxicity in several urban streams and comparing this to rapid bioassessment approaches
  • Conducted one of the first studies on potential effects of sediment contaminants on waterway health in the Yarra and Murray Rivers
  • Molecular studies on introduced pest loach demonstrating the presence of at least three (3) different species in Australia, showing one of these species originated from China
  • Completion of a microsatellite characterisation of population structure of mosquito fish

Terrestrial Biomonitoring 

The terrestrial biomonitoring group uses invertebrates to measure current impacts and develop methods to monitor change in response to changes in practice across a range of agricultural and natural environments. We provide for a variety of end users such as GWRDC, GRDC, various CMAs, wine companies such Fosters, Hardy’s and De Bortoli, and individual grape and grain growers.

There is a widespread growing interest in reducing the impact of contaminants while protecting and conserving our natural resource base for future generations. This has led to a call for new indicators and strategies to increase biodiversity on farms and in agricultural landscapes, and for developing ways to decrease the  effects of chemicals and increase sustainable food production. To be useful in measuring change, indicators must provide measurable and repeatable information in response to the question being asked about the environment. Invertebrates are abundant and diverse, sensitive and responsive to change and functionally important in that they facilitate soil turnover, include many pests, and play an essential role in pest suppression. The diversity of invertebrates in agricultural and natural environments and the important roles they play combined with their responsiveness to change gives them enormous potential to be used as indicators.

Program Highlights for 2007

 

  • CESAR chemical information for industry users has been extended to allow prediction of season long impact on beneficials. The web page will now not only provide information but also allows growers to calculate the index (“Collateral Management”) and will go live in early 2008.
  • Successful development of primers for LBAM - now on to demonstrate field predation of light brown apple moth by spiders!
  • The huge data set on vegetation and chemical effects on beneficials in vineyards continues to take shape, eagerly awaited by industry. Preliminary analyses look good.
  • A team effort was required to achieve successful exclusion of ants from a vineyard canopy. We are now looking at effects of this exclusion on pests and beneficials.

 
 

 

 



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Chemical stress projects


 
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Phil Batterham, Program Leader

"The reality is the insects win every war, and most battles within a war."

 

Advances in chemistry powered much of the agricultural and industrial development in the twentieth century.

In agriculture chemical insecticides have been applied liberally, reducing production losses caused by insect pests and dramatically improving productivity. However, insects invariably evolve resistance to these insecticides. This imposes a significant economic burden as farmers may need to use more chemical to exert control and industry engages in expensive research and development to discover new insecticides.

CESAR research is aimed at producing effective, safe and sustainable control of insect pests. This will require a deep understanding of the biology of the insect pests and any beneficial insects that may exert biological control over the pest. Research within the Chemical Stress Program funded by the Special Research Centre Grant focuses on the interaction between the insect pest and the insecticide. Other sources of funding are being used to study biological control in the Applied Program.

Insecticides kill by binding to a key target protein in the insect pest. The binding of the insecticide may prevent the target protein from carrying out an essential function and the insect dies. Alternatively the insecticide may cause death by inappropriately modifying the activity of the target.

Resistance can evolve through mutations in the gene encoding the target protein, reducing or removing the capacity for insecticide binding. However, it can also evolve through mutations that change the substrate specificity or expression levels of detoxification enzymes. The enzyme products of three large multi-gene families (carboxylesterases, cytochrome P450s and glutathione-s-transferases) have been linked to many cases of insecticide resistance in the field.

At this point in time the capacity to prevent the evolution of insecticide resistance does not exist because of a lack of knowledge about either the insecticide targets or detoxification systems in insects.

We go to war against insect pests deploying our insecticidal weapons against unknown targets, totally ignorant of the capacity of the insect’s defence (detoxification) systems. Our weapons often kill our allies, the beneficial insects. Given the lack of intelligence in this approach, it is totally unsurprising that the insects win so many battles. In days gone by this was the best that could be done. This is no longer the case. Using SRC and other funding we are studying insecticide targets and detoxification and the molecular genetic basis of field resistance. The model genetic organism, the vinegar fly (Drosophila melanogaster), is used for fundamental research. Our group also works on a number of key insect pests including the Australian sheep blowfly (Lucilia cuprina) and the cotton bollworm (Helicoverpa armigera). L. cuprina is the cause of strike in sheep. Control costs and production losses in Australia are estimated at $150-500 million per annum. H. armigera attacks over 100 species of agricultural plants inflicting global costs of approximately $5 billion dollars. Our genomic characterization of these pests underpins our capacity to investigate insecticide resistance in these species.



Our current projects are listed below:
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Climatic stress projects


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Stephen McKechnie, Program Leader

"We've generated cold tolerant strains by selection in the laboratory and found three or four new genes that changed as a consequence."

 

Climate change and global warming are challenging our flora and fauna, as well as agricultural crops and stocks.  Climate change will impose extended periods of high temperature, desiccation stress, and the depletion of food and nutrients upon plant and animal populations. Some species are likely to become extinct, others may adapt.  The Climatic Stress Program is concerned with understanding how organisms adapt and change genetically in response to such varying and extreme physical stresses.
  

Like the Program on Chemical Stress, our research on climatic stress centres on the genus Drosophila and in particular on Drosophila melanogaster, a stress resistant and genetically well characterised species.  A major objective of the Climatic Stress Program is to understand the physiological and genetic basis of the large differences in resistance to desiccation, heat and cold that occur between this cosmopolitan generalist species and several of its look-alike ‘cousin’ specialist species, often rainforest species, which are sensitive to desiccation and to the extremes of heat and cold.  In addition, D. melanogaster displays marked and heritable differentiation among strains collected from different climatic regions, as often occurs with other wide-ranging plant or animal species.  A prime focus for many of our studies has been dissecting the clinal variation in heat and cold tolerance that occurs along a 3,000km latitudinal transect in eastern Australia.

We are also investigating the effects on climate change on Australian alpine regions which are limited in distribution and highly threatened. This involves regular detailed monitoring of plant populations and their characteristics, monitoring environmental changes, and assessing the effects of simulated warming in experimental plots. These data will allow us to predict how future climate change will affect the ecology of this system and apply results to long-term management strategies for the Alpine National Park.

Highlights of the work in recent years include:

Identification of two rainforest-restricted species, D. birchii and D. bunnanda, that have very low levels of adaptive variation for desiccation resistance, despite harbouring large amounts of genetic variation for morphological traits and a range of genetic markers.  This result rings alarm bells because several other related species that are not so specialised in their habitat requirements are able to respond to selection and can be made to ‘evolve’ in the laboratory to be desiccation resistant.  We are working to find the essential differences in the evolutionary processes and genes involved in adaptation to climatic stress in these species, to see if these same limits to adaptation occur for other specialist species and for other stress resistance traits.

Genetic changes in populations are likely to serve as biomarkers for increasingly warmer and drier conditions.  Geographical clines in the frequency of genetic markers provide some of the best evidence of climatic selection.  In the wide-ranging Drosophila melanogaster two latitudinal clines, in the alcohol dehydrogenase gene and a chromosomal marker, have shifted over twenty years along the eastern coast of Australia.  Thus the present day genetic constitution of the species around, say, Sydney is now the same as it was 20 years ago further north in Coffs Harbour, and so on along the entire eastern coastline.  Populations are adapting to climate change – habitats are becoming warmer and drier.  Since adaptive changes in climatically influenced genetic markers are likely to precede local population extinction when harsh environments encroach, adaptive genetic markers such as these provide future monitoring tools for the early detection of the impact of climate change.

Working with several alpine plant species we have established that species with similar altitudinal ranges are likely to respond differently to climate change. We have examined the potential response of two dominant species of Australian alpine plants (Poa hiemata, Craspedia lamicola) to adapt to future global warming.  Soft Snow-grass (Poa hiemata) displays high levels of morphological variation; grasses at high altitude sites having shorter leaf lengths and larger circumferences than those at lower sites. Variation in morphology is partly genetic and partly environmentally driven and plants are locally adapted to their home environment. Soft Snow-grass has the potential to respond to global warming that includes an adaptive plastic response as well as genetic shifts. In comparison, field studies with Shiny-leaf Billy-button (Craspedia lamicola) show lower levels of morphological variation and populations are not locally adapted to various microclimates. In this species variation in morphology is predominantly environmentally driven.  

Field studies of Drosophila that are subjected to natural climatic stresses are revealing fascinating insights into traits and genes that are important for populations to persist.  Monitoring of egg production over the winter period in cool temperate regions, and as spring temperatures increase, indicates that strains from temperate regions are more productive than those from the tropics.  Further, particular genetic types, those found at high frequencies in temperate populations, are superior in this regard.  The genes contributing to successful over-wintering are not predominant in tropical populations.  Also, we find that the field study of resource-finding abilities under particularly hot or cold conditions is revealing ecologically important information about climatic selection in nature. Thus, field release/re-capture experiments using D. melanogaster have confirmed that populations selected in the laboratory for heat resistance perform better – they are captured in higher numbers – when released on hot days.  These results demonstrate that traits we are ‘manipulating’ in the laboratory are meaningful ecologically.  These field release/re-capture experiments at different temperatures are also providing insight into how the environment selects for wing and body size (traits that vary across climatic gradients). They also reveal that variation in particular genes influences the chances of being recaptured, differentially under hot or cold conditions.  Field data such as these are providing detailed understanding of how adaptation to climatic change occurs at both the phenotypic and molecular levels.



Our current projects are listed below:
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Applied Program


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Andrew Weeks ARC Research Fellow

"...we try to understand the pest - everything about it, where it lives, what other non-pest invertebrates it interacts with - and then we come up with management options based on that knowledge."

 

  While not part of the core research programs, CESAR currently undertakes extensive research into Applied areas in Australian agriculture. Our aim is to provide a more integrated approach to pest management in southern Australian agricultural ecosystems that also incorporates the management of beneficial organisms. Understanding the basic biology of pest complexes and how they interact with other invertebrates within specific industries is central to our research goals. We currently conduct research in several agricultural systems within southern Australia including:

- Grape and Wine Industries (GWRDC, CRCV)
- Wool Industry (AWI)
- Grains Industry (GRDC, DPI)
- Horticultural Industry (DPI, ACIAR)
- Equine Industry (RIDRC)


CESAR is committed to long-term projects with a total systems approach to pest management. Our research is helping farmers achieve maximum yield and quality for the lowest cost by developing safe and sustainable management techniques that are not heavily reliant on chemicals. CESAR’s research is directed towards:
- assessment of current control strategies in agriculture
- reproductive modes and movement patterns of pests
- biological control agents and the role of IPM
- plant-pest and predator-prey interactions
- molecular diagnosis of cryptic pest species
- the role of landscape changes on pest and beneficial invertebrates
- soil biology and the enhancement of biodiversity


Our current projects are listed below:
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